Supplementary Exercises
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Chapter 1
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Introduction to modelling
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Chapter 2
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Introduction to graph theory
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Chapter 3
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Structure of networks
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Chapter 4
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Applications of network biology
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Chapter 5
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Introduction to dynamic modelling
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Chapter 6
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Parameter estimation
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Chapter 7
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Discrete dynamic models: Boolean networks
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Chapter 8
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Introduction to constraint-based modelling
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Chapter 9
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Extending constraint-based approaches
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Chapter 10
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Perturbations to metabolic networks
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Chapter 11
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Modelling cellular interactions
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Chapter 12
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Designing biological circuits
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Chapter 13
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Robustness and evolvability of biological systems
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Chapter 14
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Epilogue: The road ahead
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Appendix A
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Introduction to key biological concepts
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Appendix B
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Reconstruction of biological networks
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Appendix C
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Databases for systems biology
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Appendix D
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Software tools compendium
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Appendix E
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MATLAB for systems biology