Chapter B: Reconstruction of biological networks #
Reconstruction of biochemical networks in microorganisms
Feist et al. (2008) Nature Reviews MicrobiologyA nice review on network reconstruction.
Deciphering Protein-Protein Interactions, Part I (Experimental Techniques)
Shoemaker and Panchenko (2007) PLoS Computational BiologyA detailed review on experimental approaches to study protein–protein interactions.
Deciphering Protein-Protein Interactions, Part II (Computational Techniques)
Shoemaker and Panchenko (2007) PLoS Computational BiologyA detailed review on computational approaches to study protein–protein interactions.
Reconstruction of cellular signalling networks and their properties
Papin et al. (2005) Nature Reviews Molecular Cell BiologyA nice review on reconstruction of signalling networks.
A survey of metabolic databases emphasizing the MetaCyc family
Karp and Caspi (2011) Archives of ToxicologyA detailed overview of MetaCyc family of metabolic network databases.