Review

publications

Integrating Model-Informed Drug Development With AI: A Synergistic Approach to Accelerating Pharmaceutical Innovation

Karthik Raman*, Rukmini Kumar, Cynthia J. Musante, Subha Madhavan,

Clinical and Translational Science

13:e70124

Modeling Microbial Communities: Perspective and Challenges

Lavanya Raajaraam, Karthik Raman*,

ACS Synthetic Biology

13:2260-2270

Big Data for a Small World: A Review on Databases and Resources for Studying Microbiomes

Pratyay Sengupta, Shobhan Karthick Muthamilselvi Sivabalan, Amrita Mahesh, Indumathi Palanikumar, Dinesh Kumar Kuppa Baskaran, Karthik Raman*,

Journal of the Indian Institute of Science

103:891-907

Discovering design principles for biological functionalities: perspectives from systems biology

Priyan Bhattacharya, Karthik Raman*, Arun K. Tangirala*,

Journal of Biosciences

47:56

Designing Biological Circuits: From Principles to Applications

Debomita Chakraborty, Raghunathan Rengaswamy, Karthik Raman*,

ACS Synthetic Biology

11:1377-1388

Modelling microbial communities: Harnessing consortia for biotechnological applications

Maziya Ibrahim†, Lavanya Raajaraam†, Karthik Raman*,

Computational and Structural Biotechnology Journal

19:3892-3907

The art of molecular computing: whence and whither

Sahana Gangadharan, Karthik Raman*,

BioEssays

43:202100051

Machine Learning Applications for Mass Spectrometry-Based Metabolomics

Ulf Liebal*, Thuy An Phan Nguyen, Malvika Sudhakar, Karthik Raman, Lars M. Blank,

Metabolites

10:243

Evolutionary design principles in metabolism

Gayathri Sambamoorthy, Himanshu Sinha*, Karthik Raman*,

Proc Biol Sci

286:20190098

Systems Biology

Karthik Raman, Nagasuma Chandra,

Resonance

15:131-153

Construction and analysis of protein--protein interaction networks

Karthik Raman*,

Automated Experimentation

2:2

Flux balance analysis of biological systems: applications and challenges

Karthik Raman, Nagasuma Chandra,

Briefings in Bioinformatics

10:435-449

Principles and Practices of Pathway Modelling

Karthik Raman, Preethi Rajagopalan, Nagasuma Chandra,

Current Bioinformatics

1:147-160