Machine Learning

people

Venkatesh K

Junior Research Fellow

Specialization:

Bioinformatics, Machine Learning

Know More

publications

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research

Jonathan L. Golob*, Tomiko T. Oskotsky*, ..., The Preterm Birth DREAM Community, ..., James C. Costello, Marina Sirota*,

Cell Reports Medicine

5:101350

10.1016/j.xcrm.2023.101350

COWAVE: A Labelled COVID-19 Wave Dataset for Building Predictive Models

Melpakkam Pradeep, Karthik Raman*,

PLoS ONE

18:e0284076

10.1371/journal.pone.0284076

Multi-omic data improve prediction of personalized tumor suppressors and oncogenes

Malvika Sudhakar, Raghunathan Rengaswamy*, Karthik Raman*,

Frontiers in Genetics

13:854190

10.3389/fgene.2022.854190

Novel ratio-metric features enable the identification of new driver genes across cancer types

Malvika Sudhakar, Raghunathan Rengaswamy*, Karthik Raman*,

Scientific Reports

12:5

10.1038/s41598-021-04015-y

NetGenes: A Database of Essential Genes Predicted Using Features From Interaction Networks

Vimaladhasan Senthamizhan, Balaraman Ravindran, Karthik Raman*,

Frontiers in Genetics

12:722198

10.3389/fgene.2021.722198

Sequence Neighborhoods Enable Reliable Prediction of Pathogenic Mutations in Cancer Genomes

Shayantan Banerjee, Karthik Raman*, Balaraman Ravindran*,

Cancers

13:2366

10.3390/cancers13102366

Mycobacterium tuberculosis (Mtb) lipid–mediated lysosomal rewiring in infected macrophages modulates intracellular Mtb trafficking and survival

Kuldeep Sachdeva, Manisha Goel, Malvika Sudhakar, Mansi Mehta, Rajmani Raju, Karthik Raman, Amit Singh, Varadharajan Sundaramurthy*,

Journal of Biological Chemistry

295:9192-9210

10.1074/jbc.RA120.012809

Machine Learning Applications for Mass Spectrometry-Based Metabolomics

Ulf Liebal*, Thuy An Phan Nguyen, Malvika Sudhakar, Karthik Raman, Lars M. Blank,

Metabolites

10:243

10.3390/metabo10060243

Network-based features enable prediction of essential genes across diverse organisms

Karthik Azhagesan, Balaraman Ravindran*, Karthik Raman*,

PLoS ONE

13:e0208722

10.1371/journal.pone.0208722

Predicting Novel Metabolic Pathways through Subgraph Mining

Aravind Sankar, Sayan Ranu*, Karthik Raman*,

Bioinformatics

33:3955-3963

10.1093/bioinformatics/btx481