Genome-scale metabolic model guided metabolic flux analysis in the endophyte _Alternaria burnsii_ NCIM1409

Divya Dharshini Uma Shankar, Sarayu Murali, Shagun Shagun, Shyam Kumar Masakapalli, Karthik Raman, Smita Srivastava*,

Bioprocess and Biosystems Engineering

 :

 Network hypermotifs in biological systems: structure, dynamics, and functional implications

Moirangthem Sailash Singh*, Priyan Bhattacharya and \me{Karthik Raman},

npj Systems Biology and Applications

 :

 Unveiling Hidden Microbial Diversity in Mars 2020 Mission Assembly Cleanrooms with Molecular Insights into the Persistent and Perseverance of Novel Species Defying Metagenome Sequencing

Shobhan Karthick Muthamilselvi Sivabalan, Varsha Vijayakumar, Pratyay Sengupta, Siddhakam Palmal, Srinivasan Krishnamurthi, Nitin Kumar Singh, Nikos Kyrpides, Karthik Raman*, Kasthuri Venkateswaran*,

Microbiology Spectrum

 :

 Investigating the impact of carbamazepine on tomato plant metabolism using genome-scale metabolic modelling

Samyuktha Srinivasan, Karthik Raman*, Smita Srivastava*,

Scientific Reports

 16:12801

 Plasmidome, resistome, and virulence-associated genes characterization of Acinetobacter johnsonii in NASA cleanrooms and a clinical setting

Anna Tumeo, Georgios Miliotis*, Andy O’Connor, Varsha Vijayakumar, Pratyay Sengupta, Francesca McDonagh, Aneta Kovarova, Christina Clarke, Brigid Hooban, Nitin Kumar Singh, Alexandre Soares Rosado, \me{Karthik Raman*}, Kasthuri Venkateswaran,

Microbiology Spectrum

 :

 A generalized Bayesian framework for maximizing information gain and model selection

Prem Jagadeesan, Karthik Raman*, Arun K. Tangirala*,

PLoS Complex Systems

 3:e0000082

 Metagenomic profiling of municipal drinking water microbiomes in an Indian city: Insights into diversity, water quality, and AMR potential

Vikas Kumar†, Shradha Sharma†, Kaomud Tyagi, Barathi Lenin, Aarti Ravindran, Karthik Raman*, Inderjeet Tyagi*,

Journal of Environmental Chemical Engineering

 13:119959

 STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

Julia M. Kelliher*, Chloe Mirzayi, ..., **STREAMS Consortium**, Emiley A. Eloe-Fadrosh*,

Nature Microbiology

 10:3059–3068

 Decoding microbial diversity, biogeochemical functions, and interaction potentials in Red Sea hydrothermal vents

Sharifah Altalhi, Júnia Schultz, Tahira Jamil, Isabel Diercks, Shradha Sharma, Jörg Follmann, Intikhab Alam, Karthik Raman, Nico Augustin, Froukje M. van der Zwan, Alexandre Soares Rosado*,

Environmental Microbiome

 20:118

 PURE: Policy-guided Unbiased REpresentations for structure-constrained molecular generation

Abhor Gupta*, Barathi Lenin, Sean Current, Rohit Batra, Balaraman Ravindran, Karthik Raman*, Srinivasan Parthasarthy*,

Journal of Cheminformatics

 17:156