Neobacillus driksii sp. nov. isolated from a Mars 2020 spacecraft assembly facility and genomic potential for lasso peptide production in Neobacillus

Asif Hameed, Francesca McDonagh, Pratyay Sengupta, Georgios Miliotis, Shobhan Karthick Muthamilselvi Sivabalan, Lukasz Szydlowski, Anna Simpson, Nitin Kumar Singh, Punchappady Devasya Rekha, Karthik Raman, Kasthuri Venkateswaran,

Microbiology Spectrum

 :

 Understanding flux switching in metabolic networks through an analysis of synthetic lethals

Sowmya Manojna Narasimha†, Tanisha Malpani†, Omkar S. Mohite, J. Saketha Nath, Karthik Raman*,

npj Systems Biology and Applications

 10:104

 Modeling Microbial Communities: Perspective and Challenges

Lavanya Raajaraam, Karthik Raman*,

ACS Synthetic Biology

 13:2260-2270

 Panera: A novel framework for surmounting uncertainty in microbial community modelling using Pan-genera metabolic models

Indumathi Palanikumar, Himanshu Sinha, Karthik Raman*,

iScience

 27:110358

 Design Principles for Perfect Adaptation in Biological Networks with Nonlinear Dynamics

Priyan Bhattacharya, Karthik Raman*, Arun K. Tangirala*,

Bulletin of Mathematical Biology

 86:100

 Designing function-specific minimal microbiomes from large microbial communities

Aswathy Raghu, Indumathi Palanikumar, Karthik Raman*,

npj Systems Biology and Applications

 10:46

 Genomic, functional, and metabolic enhancements in multidrug-resistant Enterobacter bugandensis facilitating its persistence and succession in the International Space Station

Pratyay Sengupta, Shobhan Karthick Muthamilselvi Sivabalan, Nitin Kumar Singh, Karthik Raman*, Kasthuri Venkateswaran*,

Microbiome

 12:62

 Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov.

Georgios Miliotis, Pratyay Sengupta, Asif Hameed, Maria Chuvochina, Francesca McDonagh, Anna Simpson, Ceth Parker, Nitin Singh, Punchappady Rekha, Dearbháile Morris, Karthik Raman, Nikos Kyrpides, & more

mBio

 15:e00181-24

 Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research

Jonathan L. Golob*, Tomiko T. Oskotsky*, ..., The Preterm Birth DREAM Community, ..., James C. Costello, Marina Sirota*,

Cell Reports Medicine

 5:101350

 Design Principles for Biological Adaptation: A Systems and Control-Theoretic Treatment

Priyan Bhattacharya, Karthik Raman*, Arun Tangirala,

Methods Mol Biol

 2760:35-56